SRR14730772 - maize

Basic Information

Run: SRR14730772

Assay Type: AMPLICON

Biosample: SAMN19555157

Bytes: 20165178

Center Name: UNIVERSITY OF HELSINKI

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA734744

Geographic Information

Country: Nigeria

Continent: Africa

Location Name: Nigeria: Ibadan

Sample Information

Host: maize

Isolation: -

Biosample Model: -

Collection Date: 2019-11-12

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR14730772
19.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 57
Aerobic_Chemoheterotrophy 35
Fermentation 19
Animal_Parasites_Or_Symbionts 12
Human_Associated 11
Methanol_Oxidation 8
Methylotrophy 8
Aromatic_Compound_Degradation 8
Human_Gut 7
Mammal_Gut 7
Ureolysis 5
Human_Pathogens_All 4
Nitrate_Reduction 4
Nitrate_Denitrification 3
Nitrite_Denitrification 3
Denitrification 3
Dark_Hydrogen_Oxidation 3
Nitrite_Respiration 3
Nitrate_Respiration 3
Nitrogen_Respiration 3
Human_Pathogens_Septicemia 1
Human_Pathogens_Pneumonia 1
Human_Pathogens_Nosocomia 1
Back to Amplicons List
Back to Table