SRR14730762 - maize

Basic Information

Run: SRR14730762

Assay Type: AMPLICON

Biosample: SAMN19555153

Bytes: 21410793

Center Name: UNIVERSITY OF HELSINKI

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA734744

Quality Control Information

Filter Percentage: 0.0126

QC Average Length: -

Retained Reads: 284894

Geographic Information

Country: Nigeria

Continent: Africa

Location Name: Nigeria: Ibadan

Sample Information

Host: maize

Isolation: -

Biosample Model: -

Collection Date: 2019-11-20

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR14730762

20.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 83

Chemoheterotrophy

Aerobic_Chemoheterotrophy 71

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 12

Aromatic_Compound_Degradation

Methylotrophy 8

Methylotrophy

Fermentation 8

Fermentation

Methanol_Oxidation 7

Methanol_Oxidation

Ureolysis 6

Ureolysis

Human_Associated 5

Human_Associated

Animal_Parasites_Or_Symbionts 5

Animal_Parasites_Or_Symbionts

Nitrate_Reduction 5

Nitrate_Reduction

Human_Pathogens_All 4

Human_Pathogens_All

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 3

Nitrogen_Fixation

Nitrite_Respiration 3

Nitrite_Respiration

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Phototrophy 2

Phototrophy

Methanotrophy 1

Methanotrophy

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Photoheterotrophy 1

Photoheterotrophy

Back to Amplicons List

Back to Table