SRR14675138 - Apis mellifera

Basic Information

Run: SRR14675138

Assay Type: AMPLICON

Biosample: SAMN19374722

Bytes: 9964631

Center Name: KOBENHAVN UNIVERSITET, DEPARTMENT OF BIOLOGY, SOCIAL AND SYMBIOTIC EVOLUTION GROUP

Classification: 16S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Bioproject: PRJNA732842

Geographic Information

Country: Denmark

Continent: Europe

Location Name: Denmark

Latitude/Longitude: 55.702309 N 12.559427 E

Sample Information

Host: Apis mellifera

Isolation: -

Biosample Model: -

Collection Date: 2020-09-12

Host Sex: -

Environmental Information

Broad Scale: Prarie

Local Scale: Honeybee colony

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR14675138
9.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 18
Aerobic_Chemoheterotrophy 10
Fermentation 8
Nitrate_Reduction 8
Human_Pathogens_All 6
Human_Associated 6
Animal_Parasites_Or_Symbionts 6
Nitrate_Respiration 6
Nitrogen_Respiration 6
Aromatic_Compound_Degradation 4
Ureolysis 2
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