SRR14024094 - Casimiroa edulis

Basic Information

Run: SRR14024094

Assay Type: AMPLICON

Biosample: SAMN18388558

Bytes: 15374055

Center Name: INSTITUTO DE ECOLOGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA715941

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico: Veracruz

Latitude/Longitude: 19.42 N 96.95 W

Sample Information

Host: Casimiroa edulis

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Broad Scale: not collected

Local Scale: not collected

Medium: not collected

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR14024094
14.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 71
Aerobic_Chemoheterotrophy 37
Fermentation 28
Aromatic_Compound_Degradation 9
Human_Associated 8
Animal_Parasites_Or_Symbionts 8
Nitrate_Reduction 7
Human_Pathogens_All 5
Predatory_Or_Exoparasitic 4
Ureolysis 4
Nitrogen_Fixation 3
Human_Gut 3
Mammal_Gut 3
Nitrate_Respiration 3
Nitrogen_Respiration 3
Methanol_Oxidation 2
Methylotrophy 2
Aliphatic_Non_Methane_Hydrocarbon_Degradation 2
Hydrocarbon_Degradation 2
Sulfate_Respiration 1
Respiration_Of_Sulfur_Compounds 1
Nonphotosynthetic_Cyanobacteria 1
Back to Amplicons List
Back to Table