SRR14024070 - Prunus persica

Basic Information

Run: SRR14024070

Assay Type: AMPLICON

Biosample: SAMN18388584

Bytes: 134017142

Center Name: INSTITUTO DE ECOLOGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA715941

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico: Veracruz

Latitude/Longitude: 24.94 N 100.16 W

Sample Information

Host: Prunus persica

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Broad Scale: not collected

Local Scale: not collected

Medium: not collected

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR14024070
127.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 111
Aerobic_Chemoheterotrophy 102
Nitrate_Reduction 66
Nitrate_Respiration 50
Nitrogen_Respiration 50
Human_Pathogens_All 43
Human_Associated 43
Animal_Parasites_Or_Symbionts 43
Fermentation 15
Nitrate_Denitrification 8
Nitrite_Denitrification 8
Denitrification 8
Nitrite_Respiration 8
Aromatic_Compound_Degradation 8
Chitinolysis 6
Intracellular_Parasites 6
Dark_Sulfide_Oxidation 3
Dark_Sulfur_Oxidation 3
Dark_Thiosulfate_Oxidation 3
Dark_Oxidation_Of_Sulfur_Compounds 3
Predatory_Or_Exoparasitic 3
Methanol_Oxidation 2
Methylotrophy 2
Dark_Hydrogen_Oxidation 2
Back to Amplicons List
Back to Table