SRR14024054 - Casimiroa greggii

Basic Information

Run: SRR14024054

Assay Type: AMPLICON

Biosample: SAMN18388593

Bytes: 13354540

Center Name: INSTITUTO DE ECOLOGIA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA715941

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico: San Luis Potosi

Latitude/Longitude: 23.62 N 100.39 W

Sample Information

Host: Casimiroa greggii

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Broad Scale: not collected

Local Scale: not collected

Medium: not collected

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR14024054
12.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 10
Fermentation 6
Nitrate_Reduction 5
Aerobic_Chemoheterotrophy 4
Human_Pathogens_All 2
Human_Associated 2
Animal_Parasites_Or_Symbionts 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
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