SRR13938996 - None

Basic Information

Run: SRR13938996

Assay Type: AMPLICON

Biosample: SAMN18252461

Bytes: 15909791

Center Name: INSTITUTE OF COTTON RESEARCH, CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Bioproject: PRJNA713416

Geographic Information

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR13938996
15.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 42
Aerobic_Chemoheterotrophy 27
Fermentation 14
Nitrate_Reduction 12
Human_Pathogens_All 6
Human_Associated 6
Animal_Parasites_Or_Symbionts 6
Aromatic_Compound_Degradation 6
Nitrate_Respiration 5
Nitrogen_Respiration 5
Ureolysis 2
Methanol_Oxidation 1
Methylotrophy 1
Plant_Pathogen 1
Back to Amplicons List
Back to Table