SRR13755554 - Oncorhynchus mykiss

Basic Information

Run: SRR13755554

Assay Type: AMPLICON

Biosample: SAMN18016525

Bytes: 45507234

Center Name: UNIVERSITY OF FLORENCE

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA703401

Geographic Information

Sample Information

Host: Oncorhynchus mykiss

Isolation: -

Biosample Model: -

Collection Date: 2018-05-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR13755554
43.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 38
Aerobic_Chemoheterotrophy 21
Fermentation 15
Aromatic_Compound_Degradation 5
Nitrate_Reduction 3
Thiosulfate_Respiration 2
Respiration_Of_Sulfur_Compounds 2
Human_Pathogens_All 2
Human_Associated 2
Animal_Parasites_Or_Symbionts 2
Aromatic_Hydrocarbon_Degradation 2
Hydrocarbon_Degradation 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Ureolysis 2
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