SRR13754500 - Anisodactylus

Basic Information

Run: SRR13754500

Assay Type: AMPLICON

Biosample: SAMN18011480

Bytes: 5102323

Center Name: UC BERKELEY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA703093

Quality Control Information

Filter Percentage: 0.0032

QC Average Length: 250

Retained Reads: 39084

Geographic Information

Country: USA

Continent: North America

Location Name: USA: California, Tulare County, Whitaker Forest

Latitude/Longitude: 36.7022 N 118.9325 W

Sample Information

Host: Anisodactylus

Isolation: -

Biosample Model: -

Collection Date: 2018-06-25

Host Sex: male

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR13754500
4.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 23
Aerobic_Chemoheterotrophy 21
Aromatic_Compound_Degradation 9
Human_Pathogens_All 4
Human_Associated 4
Animal_Parasites_Or_Symbionts 4
Nitrate_Reduction 3
Fermentation 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Nonphotosynthetic_Cyanobacteria 1
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