SRR13717602 - Zeugodacus cucurbitae

Basic Information

Run: SRR13717602

Assay Type: AMPLICON

Biosample: SAMN17885232

Bytes: 136888287

Center Name: UNIVERSITY OF PATRAS

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA701541

Geographic Information

Country: Bangladesh

Continent: Asia

Location Name: Bangladesh: Rajshahi

Latitude/Longitude: 23.177112 N 89.180159 E

Sample Information

Host: Zeugodacus cucurbitae

Isolation: -

Biosample Model: -

Collection Date: 2013-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR13717602

130.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 63

Chemoheterotrophy

Fermentation 60

Fermentation

Aerobic_Chemoheterotrophy 16

Aerobic_Chemoheterotrophy

Nitrate_Reduction 13

Nitrate_Reduction

Human_Associated 6

Human_Associated

Animal_Parasites_Or_Symbionts 6

Animal_Parasites_Or_Symbionts

Human_Gut 5

Human_Gut

Mammal_Gut 5

Mammal_Gut

Photoautotrophy 3

Photoautotrophy

Phototrophy 3

Phototrophy

Ureolysis 3

Ureolysis

Nitrogen_Fixation 2

Nitrogen_Fixation

Anoxygenic_Photoautotrophy_H2_Oxidizing 2

Anoxygenic_Photoautotrophy_H2_Oxidizing

Anoxygenic_Photoautotrophy 2

Anoxygenic_Photoautotrophy

Aerobic_Anoxygenic_Phototrophy 2

Aerobic_Anoxygenic_Phototrophy

Photoheterotrophy 2

Photoheterotrophy

Chitinolysis 1

Chitinolysis

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Gastroenteritis 1

Human_Pathogens_Gastroenteritis

Human_Pathogens_All 1

Human_Pathogens_All

Dark_Iron_Oxidation 1

Dark_Iron_Oxidation

Iron_Respiration 1

Iron_Respiration

Nitrate_Respiration 1

Nitrate_Respiration

Nitrogen_Respiration 1

Nitrogen_Respiration

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Anoxygenic_Photoautotrophy_S_Oxidizing 1

Anoxygenic_Photoautotrophy_S_Oxidizing

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

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