SRR13717601 - Zeugodacus cucurbitae

Basic Information

Run: SRR13717601

Assay Type: AMPLICON

Biosample: SAMN17885233

Bytes: 135498541

Center Name: UNIVERSITY OF PATRAS

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA701541

Geographic Information

Country: Bangladesh

Continent: Asia

Location Name: Bangladesh: Jessore

Latitude/Longitude: 24.489453 N 88.612312 E

Sample Information

Host: Zeugodacus cucurbitae

Isolation: -

Biosample Model: -

Collection Date: 2013-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR13717601
129.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 67
Fermentation 62
Aerobic_Chemoheterotrophy 17
Nitrate_Reduction 15
Human_Associated 8
Animal_Parasites_Or_Symbionts 8
Human_Gut 7
Mammal_Gut 7
Ureolysis 3
Sulfate_Respiration 1
Respiration_Of_Sulfur_Compounds 1
Nitrogen_Fixation 1
Human_Pathogens_All 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Intracellular_Parasites 1
Back to Amplicons List
Back to Table