SRR13516868 - Atta colombica

Basic Information

Run: SRR13516868

Assay Type: AMPLICON

Biosample: SAMN17375757

Bytes: 1574301

Center Name: UNIVERSITY OF WISCONSIN-MADISON

Classification: 16S

Sequencing Information

Instrument: 454 GS Junior

Library Layout: SINGLE

Bioproject: PRJNA691155

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Wisconsin

Latitude/Longitude: 43.07 N 89.40 W

Sample Information

Host: Atta colombica

Isolation: -

Biosample Model: -

Collection Date: 2013-11-25

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR13516868
1.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Aerobic_Chemoheterotrophy 11
Chemoheterotrophy 11
Fermentation 4
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Nitrite_Respiration 1
Nitrate_Respiration 1
Nitrate_Reduction 1
Nitrogen_Respiration 1
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