SRR13516863 - Atta colombica

Basic Information

Run: SRR13516863

Assay Type: AMPLICON

Biosample: SAMN17375761

Bytes: 2519302

Center Name: UNIVERSITY OF WISCONSIN-MADISON

Classification: 16S

Sequencing Information

Instrument: 454 GS Junior

Library Layout: SINGLE

Bioproject: PRJNA691155

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Wisconsin

Latitude/Longitude: 43.07 N 89.40 W

Sample Information

Host: Atta colombica

Isolation: -

Biosample Model: -

Collection Date: 2013-10-17

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR13516863
2.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 31
Aerobic_Chemoheterotrophy 25
Fermentation 12
Nitrogen_Fixation 9
Nitrate_Respiration 7
Nitrate_Reduction 7
Nitrogen_Respiration 7
Ureolysis 5
Nitrate_Denitrification 3
Nitrite_Denitrification 3
Denitrification 3
Nitrite_Respiration 3
Back to Amplicons List
Back to Table