SRR13441154 - Sitophilus oryzae

Basic Information

Run: SRR13441154

Assay Type: AMPLICON

Biosample: SAMN17318768

Bytes: 42458502

Center Name: UNIVERSITY OF MANITOBA

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA692251

Geographic Information

Country: Canada

Continent: North America

Location Name: Canada

Latitude/Longitude: 49.81 N 97.13 W

Sample Information

Host: Sitophilus oryzae

Isolation: -

Biosample Model: -

Collection Date: 2020-07-01

Host Sex: -

Environmental Information

Broad Scale: ENVO:01000219

Local Scale: laboratory insect colonies

Medium: artificial diet

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR13441154
40.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 10
Aerobic_Chemoheterotrophy 7
Fermentation 3
Nitrate_Reduction 1
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