SRR13183184 - None

Basic Information

Run: SRR13183184

Assay Type: AMPLICON

Biosample: SAMN16982902

Bytes: 25532989

Center Name: NATIONAL COFFEE RESEARCH CENTER - CENICAFE

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA682196

Geographic Information

Country: Colombia

Continent: South America

Location Name: Colombia: Caldas

Latitude/Longitude: 4.96894 N 75.65045 W

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: 2024-08-19

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR13183184
24.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 67
Fermentation 46
Aerobic_Chemoheterotrophy 32
Animal_Parasites_Or_Symbionts 21
Human_Associated 19
Human_Gut 18
Mammal_Gut 18
Nitrate_Reduction 6
Methanol_Oxidation 3
Methylotrophy 3
Dark_Hydrogen_Oxidation 3
Methanogenesis_By_Co2_Reduction_With_H2 2
Hydrogenotrophic_Methanogenesis 2
Methanogenesis 2
Dark_Oxidation_Of_Sulfur_Compounds 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Ureolysis 2
Dark_Sulfite_Oxidation 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Chitinolysis 1
Nitrogen_Fixation 1
Nitrite_Respiration 1
Dark_Sulfur_Oxidation 1
Human_Pathogens_All 1
Plant_Pathogen 1
Aromatic_Compound_Degradation 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Phototrophy 1
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