SRR13183183 - None

Basic Information

Run: SRR13183183

Assay Type: AMPLICON

Biosample: SAMN16982903

Bytes: 26264562

Center Name: NATIONAL COFFEE RESEARCH CENTER - CENICAFE

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA682196

Geographic Information

Country: Colombia

Continent: South America

Location Name: Colombia: Caldas

Latitude/Longitude: 4.96894 N 75.65045 W

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: 2024-08-19

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR13183183
25.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 65
Fermentation 38
Aerobic_Chemoheterotrophy 27
Animal_Parasites_Or_Symbionts 14
Human_Associated 12
Human_Gut 10
Mammal_Gut 10
Ureolysis 5
Methanol_Oxidation 4
Methylotrophy 4
Nitrate_Reduction 3
Nonphotosynthetic_Cyanobacteria 3
Nitrogen_Fixation 2
Human_Pathogens_All 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Dark_Sulfite_Oxidation 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrite_Respiration 1
Dark_Sulfur_Oxidation 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Plant_Pathogen 1
Aromatic_Compound_Degradation 1
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