SRR13180550 - Ceratitis capitata

Basic Information

Run: SRR13180550

Assay Type: AMPLICON

Biosample: SAMN16956407

Bytes: 72450827

Center Name: UNIVERSITY OF CAMERINO

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA682004

Geographic Information

Country: Italy

Continent: Europe

Location Name: Italy

Latitude/Longitude: 45.1854 N 9.16222 E

Sample Information

Host: Ceratitis capitata

Isolation: -

Biosample Model: -

Collection Date: 2018-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR13180550
69.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 39
Fermentation 24
Aerobic_Chemoheterotrophy 22
Nitrate_Reduction 10
Photosynthetic_Cyanobacteria 7
Oxygenic_Photoautotrophy 7
Photoautotrophy 7
Phototrophy 7
Animal_Parasites_Or_Symbionts 3
Human_Associated 2
Human_Pathogens_All 1
Human_Gut 1
Mammal_Gut 1
Aromatic_Compound_Degradation 1
Ureolysis 1
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