SRR12794457 - Antheraea assamensis Helfer

Basic Information

Run: SRR12794457

Assay Type: CLONE

Biosample: SAMN16396678

Bytes: 64808385

Center Name: CENTRAL MUGA ERI RESEARCH AND TRAINING INSTITUTE, CENTRAL SILK BOARD, MINISTRY OF TEXTILES, GOI

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA668103

Geographic Information

Country: India

Continent: Asia

Location Name: India: Assam

Sample Information

Host: Antheraea assamensis Helfer

Isolation: -

Biosample Model: -

Collection Date: 2018-10-30

Host Sex: -

Environmental Information

Broad Scale: Silkowrm

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR12794457
61.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 158
Aerobic_Chemoheterotrophy 112
Nitrate_Reduction 32
Aromatic_Compound_Degradation 26
Fermentation 25
Methylotrophy 16
Nitrate_Respiration 16
Nitrogen_Respiration 16
Methanol_Oxidation 15
Ureolysis 15
Hydrocarbon_Degradation 12
Nitrate_Denitrification 10
Nitrite_Denitrification 10
Denitrification 10
Nitrite_Respiration 10
Aliphatic_Non_Methane_Hydrocarbon_Degradation 10
Animal_Parasites_Or_Symbionts 8
Human_Associated 6
Dark_Hydrogen_Oxidation 5
Human_Pathogens_All 5
Predatory_Or_Exoparasitic 4
Nitrogen_Fixation 3
Dark_Sulfide_Oxidation 3
Dark_Sulfur_Oxidation 3
Dark_Thiosulfate_Oxidation 3
Dark_Oxidation_Of_Sulfur_Compounds 3
Nonphotosynthetic_Cyanobacteria 3
Methanotrophy 1
Thiosulfate_Respiration 1
Respiration_Of_Sulfur_Compounds 1
Chitinolysis 1
Xylanolysis 1
Human_Pathogens_Nosocomia 1
Human_Gut 1
Mammal_Gut 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Phototrophy 1
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