SRR12685329 - Apis cerana

Basic Information

Run: SRR12685329

Assay Type: AMPLICON

Biosample: SAMN16191670

Bytes: 57182193

Center Name: CHINA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: BGISEQ-500

Library Layout: PAIRED

Bioproject: PRJNA663994

Geographic Information

Country: China

Continent: Asia

Location Name: China:Qinghai

Latitude/Longitude: 36.047225 N 101.43906 E

Sample Information

Host: Apis cerana

Isolation: -

Biosample Model: -

Collection Date: 2017-10-31

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR12685329
54.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 34
Fermentation 29
Nitrate_Reduction 10
Aerobic_Chemoheterotrophy 5
Nitrate_Respiration 2
Nitrogen_Respiration 2
Methanol_Oxidation 1
Methylotrophy 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrite_Respiration 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Phototrophy 1
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