SRR12656166 - Pyractomena borealis

Basic Information

Run: SRR12656166

Assay Type: AMPLICON

Biosample: SAMN14678238

Bytes: 2269544

Center Name: UNIVERSITY OF CONNECTICUT

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA563849

Geographic Information

Country: USA

Continent: North America

Location Name: USA: Raised in Smedley lab, Trinity College, Hartford, Connecticut

Latitude/Longitude: missing

Sample Information

Host: Pyractomena borealis

Isolation: -

Biosample Model: -

Collection Date: 2017-01-06

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR12656166
2.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Aerobic_Chemoheterotrophy 10
Chemoheterotrophy 10
Aromatic_Compound_Degradation 3
Methanol_Oxidation 1
Methylotrophy 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrite_Respiration 1
Plant_Pathogen 1
Nitrate_Respiration 1
Nitrate_Reduction 1
Nitrogen_Respiration 1
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