SRR12656079 - Ellychnia corrusca

Basic Information

Run: SRR12656079

Assay Type: AMPLICON

Biosample: SAMN14678089

Bytes: 18286354

Center Name: UNIVERSITY OF CONNECTICUT

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA563849

Quality Control Information

Filter Percentage: 0.0102

QC Average Length: -

Retained Reads: 110592

Geographic Information

Country: USA

Continent: North America

Location Name: USA: 110 Wales Road Andover, CT

Latitude/Longitude: missing

Sample Information

Host: Ellychnia corrusca

Isolation: -

Biosample Model: -

Collection Date: 2017-05-23

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR12656079

17.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 22

Chemoheterotrophy

Aerobic_Chemoheterotrophy 19

Aerobic_Chemoheterotrophy

Nitrate_Reduction 5

Nitrate_Reduction

Ureolysis 5

Ureolysis

Nitrogen_Fixation 4

Nitrogen_Fixation

Dark_Oxidation_Of_Sulfur_Compounds 3

Dark_Oxidation_Of_Sulfur_Compounds

Predatory_Or_Exoparasitic 3

Predatory_Or_Exoparasitic

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Nitrite_Respiration 2

Nitrite_Respiration

Dark_Sulfide_Oxidation 2

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 2

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 2

Dark_Thiosulfate_Oxidation

Fermentation 2

Fermentation

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Phototrophy 2

Phototrophy

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Aromatic_Compound_Degradation 1

Aromatic_Compound_Degradation

Intracellular_Parasites 1

Intracellular_Parasites

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