SRR12653614 - Muga silkworm

Basic Information

Run: SRR12653614

Assay Type: OTHER

Biosample: SAMN16181851

Bytes: 75333611

Center Name: CENTRAL MUGA ERI RESEARCH AND TRAINING INSTITUTE, CENTRAL SILK BOARD, MINISTRY OF TEXTILES, GOI

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA663867

Geographic Information

Country: India

Continent: Asia

Location Name: India

Sample Information

Host: Muga silkworm

Isolation: -

Biosample Model: -

Collection Date: 2018-10-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR12653614

71.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 189

Chemoheterotrophy

Aerobic_Chemoheterotrophy 128

Aerobic_Chemoheterotrophy

Nitrate_Reduction 43

Nitrate_Reduction

Fermentation 42

Fermentation

Aromatic_Compound_Degradation 27

Aromatic_Compound_Degradation

Nitrate_Respiration 18

Nitrate_Respiration

Nitrogen_Respiration 18

Nitrogen_Respiration

Methylotrophy 16

Methylotrophy

Methanol_Oxidation 14

Methanol_Oxidation

Ureolysis 14

Ureolysis

Nitrate_Denitrification 13

Nitrate_Denitrification

Nitrite_Denitrification 13

Nitrite_Denitrification

Denitrification 13

Denitrification

Nitrite_Respiration 13

Nitrite_Respiration

Hydrocarbon_Degradation 11

Hydrocarbon_Degradation

Human_Associated 10

Human_Associated

Animal_Parasites_Or_Symbionts 10

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 8

Human_Pathogens_All

Dark_Hydrogen_Oxidation 7

Dark_Hydrogen_Oxidation

Aliphatic_Non_Methane_Hydrocarbon_Degradation 7

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Dark_Oxidation_Of_Sulfur_Compounds 4

Dark_Oxidation_Of_Sulfur_Compounds

Predatory_Or_Exoparasitic 4

Predatory_Or_Exoparasitic

Dark_Sulfide_Oxidation 3

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 3

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 3

Dark_Thiosulfate_Oxidation

Methanotrophy 2

Methanotrophy

Nitrogen_Fixation 2

Nitrogen_Fixation

Human_Pathogens_Nosocomia 2

Human_Pathogens_Nosocomia

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Intracellular_Parasites 2

Intracellular_Parasites

Plant_Pathogen 1

Plant_Pathogen

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Reductive_Acetogenesis 1

Reductive_Acetogenesis

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