SRR12622156 - None

Basic Information

Run: SRR12622156

Assay Type: AMPLICON

Biosample: SAMN16086946

Bytes: 16175470

Center Name: INSTITUTE OF COTTON RESEARCH, CHINESE ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Bioproject: PRJNA662509

Geographic Information

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR12622156
15.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 34
Aerobic_Chemoheterotrophy 21
Fermentation 11
Nitrate_Reduction 10
Aromatic_Compound_Degradation 5
Human_Pathogens_All 4
Human_Associated 4
Animal_Parasites_Or_Symbionts 4
Nitrate_Respiration 4
Nitrogen_Respiration 4
Methanol_Oxidation 2
Methylotrophy 2
Ureolysis 2
Back to Amplicons List
Back to Table