SRR12322399 - Anamola dimidiata

Basic Information

Run: SRR12322399

Assay Type: AMPLICON

Biosample: SAMN15608963

Bytes: 389042125

Center Name: INDIAN AGRICULTURAL RESEARCH INSTITUTE

Classification: 16S

Sequencing Information

Instrument: Illumina Genome Analyzer

Library Layout: PAIRED

Bioproject: PRJNA647896

Geographic Information

Country: India

Continent: Asia

Location Name: India: UP

Latitude/Longitude: 29.4 N 77.46 E

Sample Information

Host: Anamola dimidiata

Isolation: -

Biosample Model: -

Collection Date: 2019-11-01

Host Sex: -

Environmental Information

Broad Scale: Insect gut biome

Local Scale: intestinal tract

Medium: gut lining

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR12322399

371.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 519

Chemoheterotrophy

Aerobic_Chemoheterotrophy 292

Aerobic_Chemoheterotrophy

Fermentation 235

Fermentation

Aromatic_Compound_Degradation 143

Aromatic_Compound_Degradation

Animal_Parasites_Or_Symbionts 96

Animal_Parasites_Or_Symbionts

Human_Associated 94

Human_Associated

Nitrate_Reduction 69

Nitrate_Reduction

Human_Pathogens_All 68

Human_Pathogens_All

Human_Gut 28

Human_Gut

Mammal_Gut 28

Mammal_Gut

Nitrate_Respiration 16

Nitrate_Respiration

Nitrogen_Respiration 16

Nitrogen_Respiration

Photosynthetic_Cyanobacteria 8

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 8

Oxygenic_Photoautotrophy

Photoautotrophy 8

Photoautotrophy

Phototrophy 8

Phototrophy

Dark_Hydrogen_Oxidation 6

Dark_Hydrogen_Oxidation

Methanogenesis_By_Co2_Reduction_With_H2 5

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 5

Hydrogenotrophic_Methanogenesis

Methanogenesis 5

Methanogenesis

Aerobic_Ammonia_Oxidation 4

Aerobic_Ammonia_Oxidation

Nitrification 4

Nitrification

Methylotrophy 3

Methylotrophy

Ureolysis 3

Ureolysis

Methanol_Oxidation 2

Methanol_Oxidation

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Chitinolysis 2

Chitinolysis

Nitrite_Respiration 2

Nitrite_Respiration

Xylanolysis 2

Xylanolysis

Human_Pathogens_Diarrhea 2

Human_Pathogens_Diarrhea

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Methanotrophy 1

Methanotrophy

Nitrogen_Fixation 1

Nitrogen_Fixation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Meningitis 1

Human_Pathogens_Meningitis

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

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