SRR12241217 - Diptera

Basic Information

Run: SRR12241217

Assay Type: AMPLICON

Biosample: SAMN15547754

Bytes: 343778382

Center Name: INSTITUTE OF BIOLOGY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA646601

Geographic Information

Country: Romania

Continent: Europe

Location Name: Romania

Latitude/Longitude: 44.83 N 26.80 E

Sample Information

Host: Diptera

Isolation: -

Biosample Model: -

Collection Date: 2019-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR12241217
327.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 127
Aerobic_Chemoheterotrophy 72
Fermentation 55
Human_Associated 40
Animal_Parasites_Or_Symbionts 40
Human_Gut 28
Mammal_Gut 28
Human_Pathogens_All 12
Aromatic_Compound_Degradation 12
Nitrate_Reduction 12
Ureolysis 8
Nitrate_Respiration 6
Nitrogen_Respiration 6
Aromatic_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
Plastic_Degradation 1
Back to Amplicons List
Back to Table