SRR12241199 - not collected

Basic Information

Run: SRR12241199

Assay Type: AMPLICON

Biosample: SAMN15548330

Bytes: 14465877

Center Name: HEBEI UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA646618

Geographic Information

Country: China

Continent: Asia

Location Name: China:Guangxi

Latitude/Longitude: missing

Sample Information

Host: not collected

Isolation: -

Biosample Model: -

Collection Date: 2019-08-15

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR12241199

13.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 63

Chemoheterotrophy

Aerobic_Chemoheterotrophy 45

Aerobic_Chemoheterotrophy

Fermentation 11

Fermentation

Ureolysis 8

Ureolysis

Nitrate_Reduction 7

Nitrate_Reduction

Phototrophy 7

Phototrophy

Methylotrophy 6

Methylotrophy

Human_Associated 6

Human_Associated

Animal_Parasites_Or_Symbionts 6

Animal_Parasites_Or_Symbionts

Photosynthetic_Cyanobacteria 6

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 6

Oxygenic_Photoautotrophy

Photoautotrophy 6

Photoautotrophy

Methanol_Oxidation 5

Methanol_Oxidation

Human_Pathogens_All 5

Human_Pathogens_All

Nitrogen_Fixation 4

Nitrogen_Fixation

Nitrate_Respiration 4

Nitrate_Respiration

Nitrogen_Respiration 4

Nitrogen_Respiration

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Hydrocarbon_Degradation 3

Hydrocarbon_Degradation

Intracellular_Parasites 2

Intracellular_Parasites

Predatory_Or_Exoparasitic 2

Predatory_Or_Exoparasitic

Methanotrophy 1

Methanotrophy

Chitinolysis 1

Chitinolysis

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Plant_Pathogen 1

Plant_Pathogen

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photoheterotrophy 1

Photoheterotrophy

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