SRR12241190 - not collected

Basic Information

Run: SRR12241190

Assay Type: AMPLICON

Biosample: SAMN15548338

Bytes: 14428599

Center Name: HEBEI UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA646618

Geographic Information

Country: China

Continent: Asia

Location Name: China:Zhejiang

Latitude/Longitude: missing

Sample Information

Host: not collected

Isolation: -

Biosample Model: -

Collection Date: 2019-10-03

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR12241190

13.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 66

Chemoheterotrophy

Aerobic_Chemoheterotrophy 46

Aerobic_Chemoheterotrophy

Fermentation 11

Fermentation

Phototrophy 11

Phototrophy

Human_Pathogens_All 10

Human_Pathogens_All

Human_Associated 10

Human_Associated

Animal_Parasites_Or_Symbionts 10

Animal_Parasites_Or_Symbionts

Photosynthetic_Cyanobacteria 10

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 10

Oxygenic_Photoautotrophy

Photoautotrophy 10

Photoautotrophy

Ureolysis 9

Ureolysis

Nitrate_Reduction 7

Nitrate_Reduction

Nitrate_Respiration 6

Nitrate_Respiration

Nitrogen_Respiration 6

Nitrogen_Respiration

Methanol_Oxidation 5

Methanol_Oxidation

Methylotrophy 5

Methylotrophy

Aromatic_Compound_Degradation 4

Aromatic_Compound_Degradation

Chitinolysis 2

Chitinolysis

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Meningitis 1

Human_Pathogens_Meningitis

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Photoheterotrophy 1

Photoheterotrophy

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