SRR12241175 - not collected

Basic Information

Run: SRR12241175

Assay Type: AMPLICON

Biosample: SAMN15548352

Bytes: 13460238

Center Name: HEBEI UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA646618

Geographic Information

Country: China

Continent: Asia

Location Name: China:Guangxi

Latitude/Longitude: missing

Sample Information

Host: not collected

Isolation: -

Biosample Model: -

Collection Date: 2019-08-13

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR12241175
12.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 36
Fermentation 17
Aerobic_Chemoheterotrophy 14
Methylotrophy 4
Nitrogen_Fixation 4
Aromatic_Compound_Degradation 4
Hydrocarbon_Degradation 3
Nitrate_Reduction 3
Ureolysis 3
Methanotrophy 2
Methanol_Oxidation 2
Human_Gut 2
Human_Associated 2
Mammal_Gut 2
Animal_Parasites_Or_Symbionts 2
Human_Pathogens_All 1
Aromatic_Hydrocarbon_Degradation 1
Nonphotosynthetic_Cyanobacteria 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Phototrophy 1
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