SRR12241172 - not collected

Basic Information

Run: SRR12241172

Assay Type: AMPLICON

Biosample: SAMN15548355

Bytes: 12789601

Center Name: HEBEI UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA646618

Geographic Information

Country: China

Continent: Asia

Location Name: China:Hubei

Latitude/Longitude: missing

Sample Information

Host: not collected

Isolation: -

Biosample Model: -

Collection Date: 2019-08-15

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR12241172

12.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 133

Chemoheterotrophy

Aerobic_Chemoheterotrophy 97

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 21

Aromatic_Compound_Degradation

Fermentation 15

Fermentation

Ureolysis 9

Ureolysis

Animal_Parasites_Or_Symbionts 8

Animal_Parasites_Or_Symbionts

Nitrate_Reduction 8

Nitrate_Reduction

Nitrogen_Fixation 6

Nitrogen_Fixation

Intracellular_Parasites 6

Intracellular_Parasites

Methylotrophy 5

Methylotrophy

Human_Pathogens_All 5

Human_Pathogens_All

Human_Associated 5

Human_Associated

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Predatory_Or_Exoparasitic 5

Predatory_Or_Exoparasitic

Xylanolysis 4

Xylanolysis

Methanol_Oxidation 3

Methanol_Oxidation

Chitinolysis 3

Chitinolysis

Hydrocarbon_Degradation 3

Hydrocarbon_Degradation

Methanotrophy 2

Methanotrophy

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Nitrite_Respiration 2

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Photoheterotrophy 1

Photoheterotrophy

Phototrophy 1

Phototrophy

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