SRR12228999 - ACP

Basic Information

Run: SRR12228999

Assay Type: AMPLICON

Biosample: SAMN15544259

Bytes: 27141805

Center Name: HUNAN AGRICULTURAL UNIVERSITY

Classification: ITS

Sequencing Information

Instrument: Ion Torrent S5 XL

Library Layout: SINGLE

Bioproject: PRJNA646487

Geographic Information

Country: China

Continent: Asia

Location Name: China:Yongzhou

Latitude/Longitude: missing

Sample Information

Host: ACP

Isolation: -

Biosample Model: -

Collection Date: missing

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR12228999
25.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Intracellular_Parasites 2
Chemoheterotrophy 2
Fermentation 1
Aerobic_Chemoheterotrophy 1
Nitrate_Reduction 1
Back to Amplicons List
Back to Table