SRR12228992 - ACP

Basic Information

Run: SRR12228992

Assay Type: AMPLICON

Biosample: SAMN15544265

Bytes: 29768395

Center Name: HUNAN AGRICULTURAL UNIVERSITY

Classification: ITS

Sequencing Information

Instrument: Ion Torrent S5 XL

Library Layout: SINGLE

Bioproject: PRJNA646487

Geographic Information

Country: China

Continent: Asia

Location Name: China: Chenzhou

Latitude/Longitude: missing

Sample Information

Host: ACP

Isolation: -

Biosample Model: -

Collection Date: missing

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR12228992

28.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 101

Chemoheterotrophy

Fermentation 60

Fermentation

Aerobic_Chemoheterotrophy 33

Aerobic_Chemoheterotrophy

Animal_Parasites_Or_Symbionts 18

Animal_Parasites_Or_Symbionts

Human_Associated 17

Human_Associated

Human_Gut 11

Human_Gut

Mammal_Gut 11

Mammal_Gut

Nitrate_Reduction 11

Nitrate_Reduction

Human_Pathogens_All 7

Human_Pathogens_All

Xylanolysis 5

Xylanolysis

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Respiration_Of_Sulfur_Compounds 4

Respiration_Of_Sulfur_Compounds

Photosynthetic_Cyanobacteria 4

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 4

Oxygenic_Photoautotrophy

Photoautotrophy 4

Photoautotrophy

Phototrophy 4

Phototrophy

Sulfate_Respiration 3

Sulfate_Respiration

Hydrocarbon_Degradation 3

Hydrocarbon_Degradation

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Intracellular_Parasites 3

Intracellular_Parasites

Methanotrophy 2

Methanotrophy

Methylotrophy 2

Methylotrophy

Chitinolysis 2

Chitinolysis

Nitrogen_Fixation 2

Nitrogen_Fixation

Cellulolysis 2

Cellulolysis

Human_Pathogens_Nosocomia 2

Human_Pathogens_Nosocomia

Ureolysis 2

Ureolysis

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Methanogenesis 1

Methanogenesis

Aerobic_Ammonia_Oxidation 1

Aerobic_Ammonia_Oxidation

Nitrification 1

Nitrification

Sulfur_Respiration 1

Sulfur_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Arsenate_Respiration 1

Arsenate_Respiration

Dissimilatory_Arsenate_Reduction 1

Dissimilatory_Arsenate_Reduction

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrate_Ammonification 1

Nitrate_Ammonification

Nitrite_Ammonification 1

Nitrite_Ammonification

Nitrite_Respiration 1

Nitrite_Respiration

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Oil_Bioremediation 1

Oil_Bioremediation

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Fumarate_Respiration 1

Fumarate_Respiration

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

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