SRR12228984 - ACP

Basic Information

Run: SRR12228984

Assay Type: AMPLICON

Biosample: SAMN15544239

Bytes: 27287019

Center Name: HUNAN AGRICULTURAL UNIVERSITY

Classification: ITS

Sequencing Information

Instrument: Ion Torrent S5 XL

Library Layout: SINGLE

Bioproject: PRJNA646487

Geographic Information

Country: China

Continent: Asia

Location Name: China:Yongzhou

Latitude/Longitude: missing

Sample Information

Host: ACP

Isolation: -

Biosample Model: -

Collection Date: missing

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR12228984
26.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 5
Aerobic_Chemoheterotrophy 3
Human_Associated 3
Animal_Parasites_Or_Symbionts 3
Human_Pathogens_All 2
Nitrate_Respiration 2
Nitrate_Reduction 2
Nitrogen_Respiration 2
Methanol_Oxidation 1
Methylotrophy 1
Fermentation 1
Human_Gut 1
Mammal_Gut 1
Intracellular_Parasites 1
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