SRR1197747 - Sprague Dawley

Basic Information

Run: SRR1197747

Assay Type: AMPLICON

Biosample: SAMN02690688

Bytes: 28012975

Center Name: INSTITUTE OF INSECT SCIENCE, ZHEJIANG UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA241292

Quality Control Information

Filter Percentage: 0.0

QC Average Length: -

Retained Reads: -

Geographic Information

Country: China

Continent: Asia

Location Name: China:Hangzhou

Latitude/Longitude: E 30.298, N 120.091

Sample Information

Host: Sprague Dawley

Isolation: -

Biosample Model: -

Collection Date: 2013-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR1197747
26.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 308
Aerobic_Chemoheterotrophy 184
Fermentation 63
Aerobic_Ammonia_Oxidation 56
Nitrification 56
Nitrate_Reduction 28
Animal_Parasites_Or_Symbionts 27
Human_Associated 26
Aromatic_Compound_Degradation 20
Human_Gut 17
Mammal_Gut 17
Nitrate_Respiration 17
Nitrogen_Respiration 17
Methylotrophy 15
Methanol_Oxidation 11
Human_Pathogens_All 10
Xylanolysis 9
Hydrocarbon_Degradation 8
Respiration_Of_Sulfur_Compounds 7
Chitinolysis 7
Sulfate_Respiration 5
Dark_Hydrogen_Oxidation 5
Predatory_Or_Exoparasitic 5
Ureolysis 5
Methanotrophy 4
Nitrate_Denitrification 4
Nitrite_Denitrification 4
Denitrification 4
Nitrite_Respiration 4
Aliphatic_Non_Methane_Hydrocarbon_Degradation 4
Intracellular_Parasites 4
Thiosulfate_Respiration 3
Nitrogen_Fixation 3
Sulfur_Respiration 2
Dark_Thiosulfate_Oxidation 2
Dark_Oxidation_Of_Sulfur_Compounds 2
Sulfite_Respiration 1
Cellulolysis 1
Dark_Sulfide_Oxidation 1
Dark_Sulfur_Oxidation 1
Human_Pathogens_Diarrhea 1
Plant_Pathogen 1
Dark_Iron_Oxidation 1
Iron_Respiration 1
Fumarate_Respiration 1
Nonphotosynthetic_Cyanobacteria 1
Photoheterotrophy 1
Phototrophy 1
Back to Amplicons List
Back to Table