SRR11962713 - Spodoptera exigua

Basic Information

Run: SRR11962713

Assay Type: AMPLICON

Biosample: SAMN15182360

Bytes: 10683596

Center Name: SHENYANG AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: SINGLE

Bioproject: PRJNA638182

Geographic Information

Country: China

Continent: Asia

Location Name: China:Xinmin

Latitude/Longitude: 41.53 N 122.55 E

Sample Information

Host: Spodoptera exigua

Isolation: -

Biosample Model: -

Collection Date: 2019-09-07

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR11962713

10.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 73

Chemoheterotrophy

Aerobic_Chemoheterotrophy 55

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 10

Aromatic_Compound_Degradation

Fermentation 9

Fermentation

Nitrate_Reduction 9

Nitrate_Reduction

Methanol_Oxidation 7

Methanol_Oxidation

Methylotrophy 7

Methylotrophy

Ureolysis 7

Ureolysis

Human_Pathogens_All 4

Human_Pathogens_All

Human_Associated 4

Human_Associated

Animal_Parasites_Or_Symbionts 4

Animal_Parasites_Or_Symbionts

Nitrogen_Fixation 3

Nitrogen_Fixation

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Sulfate_Respiration 1

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 1

Respiration_Of_Sulfur_Compounds

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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