SRR11962709 - Spodoptera exigua

Basic Information

Run: SRR11962709

Assay Type: AMPLICON

Biosample: SAMN15182328

Bytes: 11067700

Center Name: SHENYANG AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: SINGLE

Bioproject: PRJNA638182

Geographic Information

Country: China

Continent: Asia

Location Name: China:Jinan

Latitude/Longitude: 36.15 N 117.26 E

Sample Information

Host: Spodoptera exigua

Isolation: -

Biosample Model: -

Collection Date: 2019-08-18

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR11962709
10.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 49
Aerobic_Chemoheterotrophy 35
Methanol_Oxidation 8
Methylotrophy 8
Ureolysis 7
Aromatic_Compound_Degradation 5
Nitrogen_Fixation 4
Fermentation 4
Nitrate_Reduction 4
Nitrate_Respiration 3
Nitrogen_Respiration 3
Human_Pathogens_All 2
Human_Associated 2
Animal_Parasites_Or_Symbionts 2
Photosynthetic_Cyanobacteria 2
Oxygenic_Photoautotrophy 2
Photoautotrophy 2
Phototrophy 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Nitrite_Respiration 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Aromatic_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
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