SRR1193072 - Clethrionomys rufocanus\, Apodemus agrarius\,

Basic Information

Run: SRR1193072

Assay Type: AMPLICON

Biosample: SAMN02689134

Bytes: 16228798

Center Name: INSTITUTE OF INSECT SCIENCE, ZHEJIANG UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA241292

Geographic Information

Country: China

Continent: Asia

Location Name: China:Mudanjiang

Latitude/Longitude: 44.916 N 129.498 E

Sample Information

Host: Clethrionomys rufocanus\, Apodemus agrarius\,

Isolation: -

Biosample Model: -

Collection Date: 2013-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR1193072
15.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 82
Aerobic_Chemoheterotrophy 63
Aromatic_Compound_Degradation 18
Animal_Parasites_Or_Symbionts 14
Nitrate_Reduction 14
Human_Associated 12
Fermentation 11
Human_Gut 9
Mammal_Gut 9
Intracellular_Parasites 8
Nitrate_Respiration 7
Nitrogen_Respiration 7
Sulfate_Respiration 4
Respiration_Of_Sulfur_Compounds 4
Dark_Thiosulfate_Oxidation 3
Dark_Oxidation_Of_Sulfur_Compounds 3
Human_Pathogens_All 3
Hydrocarbon_Degradation 3
Methanotrophy 2
Methylotrophy 2
Dark_Sulfide_Oxidation 2
Dark_Sulfur_Oxidation 2
Sulfite_Respiration 1
Thiosulfate_Respiration 1
Dark_Hydrogen_Oxidation 1
Nitrogen_Fixation 1
Aliphatic_Non_Methane_Hydrocarbon_Degradation 1
Dark_Iron_Oxidation 1
Photoheterotrophy 1
Phototrophy 1
Ureolysis 1
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