SRR11795890 - Pieris brassicae

Basic Information

Run: SRR11795890

Assay Type: AMPLICON

Biosample: SAMN14932204

Bytes: 25016357

Center Name: BERLIN CENTER FOR GENOMICS IN BIODIVERSITY RESEARCH

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA555186

Quality Control Information

Filter Percentage: 0.1604

QC Average Length: -

Retained Reads: 121864

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not applicable

Latitude/Longitude: not applicable

Sample Information

Host: Pieris brassicae

Isolation: -

Biosample Model: -

Collection Date: not applicable

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR11795890

23.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 26

Chemoheterotrophy

Aerobic_Chemoheterotrophy 21

Aerobic_Chemoheterotrophy

Nitrate_Reduction 5

Nitrate_Reduction

Fermentation 4

Fermentation

Ureolysis 4

Ureolysis

Methylotrophy 3

Methylotrophy

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Methanol_Oxidation 2

Methanol_Oxidation

Nitrogen_Fixation 2

Nitrogen_Fixation

Dark_Thiosulfate_Oxidation 2

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_All 2

Human_Pathogens_All

Human_Associated 2

Human_Associated

Animal_Parasites_Or_Symbionts 2

Animal_Parasites_Or_Symbionts

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Methanotrophy 1

Methanotrophy

Dark_Sulfite_Oxidation 1

Dark_Sulfite_Oxidation

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Chitinolysis 1

Chitinolysis

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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