SRR11795889 - Pieris brassicae

Basic Information

Run: SRR11795889

Assay Type: AMPLICON

Biosample: SAMN14932187

Bytes: 42421239

Center Name: BERLIN CENTER FOR GENOMICS IN BIODIVERSITY RESEARCH

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA555186

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not applicable

Latitude/Longitude: not applicable

Sample Information

Host: Pieris brassicae

Isolation: -

Biosample Model: -

Collection Date: not applicable

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR11795889
40.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 45
Aerobic_Chemoheterotrophy 37
Nitrate_Reduction 7
Methanol_Oxidation 5
Methylotrophy 5
Fermentation 4
Nitrate_Respiration 4
Nitrogen_Respiration 4
Human_Associated 3
Animal_Parasites_Or_Symbionts 3
Aromatic_Compound_Degradation 3
Photosynthetic_Cyanobacteria 3
Oxygenic_Photoautotrophy 3
Photoautotrophy 3
Phototrophy 3
Ureolysis 3
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Dark_Hydrogen_Oxidation 2
Nitrite_Respiration 2
Xylanolysis 2
Human_Pathogens_All 2
Chitinolysis 1
Dark_Oxidation_Of_Sulfur_Compounds 1
Human_Gut 1
Mammal_Gut 1
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