SRR11795877 - Pieris brassicae

Basic Information

Run: SRR11795877

Assay Type: AMPLICON

Biosample: SAMN14932215

Bytes: 49268647

Center Name: BERLIN CENTER FOR GENOMICS IN BIODIVERSITY RESEARCH

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA555186

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: not applicable

Latitude/Longitude: not applicable

Sample Information

Host: Pieris brassicae

Isolation: -

Biosample Model: -

Collection Date: not applicable

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR11795877

47.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 70

Chemoheterotrophy

Aerobic_Chemoheterotrophy 58

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 10

Aromatic_Compound_Degradation

Nitrate_Reduction 10

Nitrate_Reduction

Fermentation 9

Fermentation

Human_Associated 8

Human_Associated

Animal_Parasites_Or_Symbionts 8

Animal_Parasites_Or_Symbionts

Ureolysis 8

Ureolysis

Phototrophy 7

Phototrophy

Methylotrophy 6

Methylotrophy

Human_Pathogens_All 6

Human_Pathogens_All

Methanol_Oxidation 5

Methanol_Oxidation

Photosynthetic_Cyanobacteria 5

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 5

Oxygenic_Photoautotrophy

Photoautotrophy 5

Photoautotrophy

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Chitinolysis 2

Chitinolysis

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Nitrogen_Fixation 2

Nitrogen_Fixation

Nitrite_Respiration 2

Nitrite_Respiration

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Intracellular_Parasites 2

Intracellular_Parasites

Photoheterotrophy 2

Photoheterotrophy

Methanotrophy 1

Methanotrophy

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Aerobic_Anoxygenic_Phototrophy 1

Aerobic_Anoxygenic_Phototrophy

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