SRR11784433 - maize

Basic Information

Run: SRR11784433

Assay Type: AMPLICON

Biosample: SAMN14887992

Bytes: 12308085

Center Name: UNIVERSITY OF HELSINKI

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA631705

Geographic Information

Country: Nigeria

Continent: Africa

Location Name: Nigeria: South west, Oyo

Sample Information

Host: maize

Isolation: -

Biosample Model: -

Collection Date: 2019-05-20

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR11784433
11.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 35
Aerobic_Chemoheterotrophy 20
Fermentation 17
Human_Associated 7
Animal_Parasites_Or_Symbionts 7
Human_Gut 5
Mammal_Gut 5
Aromatic_Compound_Degradation 3
Human_Pathogens_All 2
Nitrate_Reduction 2
Ureolysis 2
Methanol_Oxidation 1
Methylotrophy 1
Nitrogen_Fixation 1
Xylanolysis 1
Human_Pathogens_Septicemia 1
Human_Pathogens_Pneumonia 1
Human_Pathogens_Nosocomia 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Back to Amplicons List
Back to Table