SRR11784431 - maize

Basic Information

Run: SRR11784431

Assay Type: AMPLICON

Biosample: SAMN14887984

Bytes: 17355558

Center Name: UNIVERSITY OF HELSINKI

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA631705

Quality Control Information

Filter Percentage: 0.0

QC Average Length: -

Retained Reads: 132736

Geographic Information

Country: Nigeria

Continent: Africa

Location Name: Nigeria: South west, Osun

Sample Information

Host: maize

Isolation: -

Biosample Model: -

Collection Date: 2019-05-24

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR11784431
16.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 23
Fermentation 13
Aerobic_Chemoheterotrophy 10
Aromatic_Compound_Degradation 3
Nitrate_Reduction 3
Human_Associated 2
Animal_Parasites_Or_Symbionts 2
Human_Pathogens_All 1
Human_Gut 1
Mammal_Gut 1
Hydrocarbon_Degradation 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Ureolysis 1
Back to Amplicons List
Back to Table