SRR11607996 - Ips acuminatus

Basic Information

Run: SRR11607996

Assay Type: AMPLICON

Biosample: SAMN14689169

Bytes: 18792573

Center Name: CZECH UNIVERSITY OF LIFE SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA627871

Geographic Information

Country: Czech Republic

Continent: Europe

Location Name: Czech Republic

Latitude/Longitude: 49.713 N 18.045 E

Sample Information

Host: Ips acuminatus

Isolation: -

Biosample Model: -

Collection Date: 2018-06-30

Host Sex: -

Environmental Information

Broad Scale: Forest insect microbiome

Local Scale: Scolytinae

Medium: gut tissue

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR11607996

17.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 67

Chemoheterotrophy

Aerobic_Chemoheterotrophy 49

Aerobic_Chemoheterotrophy

Fermentation 16

Fermentation

Human_Associated 10

Human_Associated

Animal_Parasites_Or_Symbionts 10

Animal_Parasites_Or_Symbionts

Human_Gut 7

Human_Gut

Mammal_Gut 7

Mammal_Gut

Aromatic_Compound_Degradation 7

Aromatic_Compound_Degradation

Ureolysis 5

Ureolysis

Human_Pathogens_All 4

Human_Pathogens_All

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Phototrophy 3

Phototrophy

Nitrate_Reduction 2

Nitrate_Reduction

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Nitrate_Respiration 1

Nitrate_Respiration

Nitrogen_Respiration 1

Nitrogen_Respiration

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Aerobic_Anoxygenic_Phototrophy 1

Aerobic_Anoxygenic_Phototrophy

Photoheterotrophy 1

Photoheterotrophy

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