SRR11607974 - Ips acuminatus

Basic Information

Run: SRR11607974

Assay Type: AMPLICON

Biosample: SAMN14689171

Bytes: 9501109

Center Name: CZECH UNIVERSITY OF LIFE SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA627871

Geographic Information

Country: Czech Republic

Continent: Europe

Location Name: Czech Republic

Latitude/Longitude: 49.713 N 18.045 E

Sample Information

Host: Ips acuminatus

Isolation: -

Biosample Model: -

Collection Date: 2018-06-30

Host Sex: -

Environmental Information

Broad Scale: Forest insect microbiome

Local Scale: Scolytinae

Medium: gut tissue

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR11607974
9.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 35
Aerobic_Chemoheterotrophy 22
Fermentation 12
Human_Gut 5
Human_Associated 5
Mammal_Gut 5
Animal_Parasites_Or_Symbionts 5
Nitrate_Reduction 5
Methanol_Oxidation 2
Methylotrophy 2
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Nitrite_Respiration 2
Aromatic_Compound_Degradation 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Phototrophy 2
Dark_Hydrogen_Oxidation 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Aerobic_Anoxygenic_Phototrophy 1
Photoheterotrophy 1
Ureolysis 1
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