SRR11607968 - Ips sexdentatus

Basic Information

Run: SRR11607968

Assay Type: AMPLICON

Biosample: SAMN14689203

Bytes: 21406921

Center Name: CZECH UNIVERSITY OF LIFE SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA627871

Geographic Information

Country: Czech Republic

Continent: Europe

Location Name: Czech Republic

Latitude/Longitude: 49.173 N 16.317 E

Sample Information

Host: Ips sexdentatus

Isolation: -

Biosample Model: -

Collection Date: 2018-06-30

Host Sex: -

Environmental Information

Broad Scale: Forest insect microbiome

Local Scale: Scolytinae

Medium: gut tissue

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR11607968
20.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Fermentation 5
Chemoheterotrophy 5
Aerobic_Chemoheterotrophy 3
Intracellular_Parasites 2
Human_Gut 1
Human_Associated 1
Mammal_Gut 1
Animal_Parasites_Or_Symbionts 1
Back to Amplicons List
Back to Table