SRR11533362 - Grapholita molesta

Basic Information

Run: SRR11533362

Assay Type: AMPLICON

Biosample: SAMN14587026

Bytes: 20549277

Center Name: CHINA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA624862

Geographic Information

Country: China

Continent: Asia

Location Name: China

Latitude/Longitude: missing

Sample Information

Host: Grapholita molesta

Isolation: -

Biosample Model: -

Collection Date: 2019-03-15

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR11533362

19.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 60

Chemoheterotrophy

Aerobic_Chemoheterotrophy 44

Aerobic_Chemoheterotrophy

Nitrate_Reduction 12

Nitrate_Reduction

Fermentation 11

Fermentation

Aromatic_Compound_Degradation 9

Aromatic_Compound_Degradation

Ureolysis 8

Ureolysis

Methanol_Oxidation 7

Methanol_Oxidation

Methylotrophy 7

Methylotrophy

Nitrate_Respiration 7

Nitrate_Respiration

Nitrogen_Respiration 7

Nitrogen_Respiration

Human_Associated 4

Human_Associated

Animal_Parasites_Or_Symbionts 4

Animal_Parasites_Or_Symbionts

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Nitrogen_Fixation 3

Nitrogen_Fixation

Nitrite_Respiration 3

Nitrite_Respiration

Human_Pathogens_All 3

Human_Pathogens_All

Thiosulfate_Respiration 2

Thiosulfate_Respiration

Respiration_Of_Sulfur_Compounds 2

Respiration_Of_Sulfur_Compounds

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Sulfur_Respiration 1

Sulfur_Respiration

Nitrous_Oxide_Denitrification 1

Nitrous_Oxide_Denitrification

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Dark_Iron_Oxidation 1

Dark_Iron_Oxidation

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