SRR11533355 - Grapholita molesta

Basic Information

Run: SRR11533355

Assay Type: AMPLICON

Biosample: SAMN14587006

Bytes: 13066393

Center Name: CHINA AGRICULTURAL UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA624862

Geographic Information

Country: China

Continent: Asia

Location Name: China

Latitude/Longitude: missing

Sample Information

Host: Grapholita molesta

Isolation: -

Biosample Model: -

Collection Date: 2019-03-15

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR11533355

12.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 36

Chemoheterotrophy

Aerobic_Chemoheterotrophy 27

Aerobic_Chemoheterotrophy

Nitrate_Reduction 7

Nitrate_Reduction

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Ureolysis 5

Ureolysis

Methanol_Oxidation 4

Methanol_Oxidation

Methylotrophy 4

Methylotrophy

Human_Associated 4

Human_Associated

Animal_Parasites_Or_Symbionts 4

Animal_Parasites_Or_Symbionts

Nitrate_Respiration 4

Nitrate_Respiration

Nitrogen_Respiration 4

Nitrogen_Respiration

Nitrogen_Fixation 3

Nitrogen_Fixation

Fermentation 3

Fermentation

Human_Pathogens_All 3

Human_Pathogens_All

Nonphotosynthetic_Cyanobacteria 3

Nonphotosynthetic_Cyanobacteria

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Nitrite_Respiration 2

Nitrite_Respiration

Chitinolysis 1

Chitinolysis

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Cellulolysis 1

Cellulolysis

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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