SRR11434391 - N. vitripennis

Basic Information

Run: SRR11434391

Assay Type: AMPLICON

Biosample: SAMN14333139

Bytes: 11485503

Center Name: HARVARD UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA611497

Geographic Information

Country: uncalculated

Continent: uncalculated

Location Name: Not applicable

Sample Information

Host: N. vitripennis

Isolation: -

Biosample Model: -

Collection Date: 2024-01-16

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR11434391

11.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 42

Chemoheterotrophy

Fermentation 24

Fermentation

Animal_Parasites_Or_Symbionts 24

Animal_Parasites_Or_Symbionts

Aerobic_Chemoheterotrophy 22

Aerobic_Chemoheterotrophy

Human_Associated 18

Human_Associated

Nitrate_Reduction 15

Nitrate_Reduction

Human_Pathogens_All 11

Human_Pathogens_All

Human_Gut 11

Human_Gut

Mammal_Gut 11

Mammal_Gut

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Aromatic_Compound_Degradation 4

Aromatic_Compound_Degradation

Fumarate_Respiration 2

Fumarate_Respiration

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Human_Pathogens_Diarrhea 1

Human_Pathogens_Diarrhea

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Ureolysis 1

Ureolysis

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