SRR11354441 - serpentine grasses

Basic Information

Run: SRR11354441

Assay Type: AMPLICON

Biosample: SAMN14401071

Bytes: 14094247

Center Name: UNIVERSITY OF TEXAS AT ARLINGTON

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA613319

Geographic Information

Country: USA

Continent: North America

Location Name: USA: North Carolina, Shooting Creek

Latitude/Longitude: 35.085 N 83.6177 W

Sample Information

Host: serpentine grasses

Isolation: -

Biosample Model: -

Collection Date: 2017-06-08

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR11354441
13.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 18
Methanol_Oxidation 10
Methylotrophy 10
Ureolysis 10
Aerobic_Chemoheterotrophy 5
Hydrocarbon_Degradation 3
Intracellular_Parasites 1
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