SRR11354260 - serpentine grasses

Basic Information

Run: SRR11354260

Assay Type: AMPLICON

Biosample: SAMN14401123

Bytes: 18302316

Center Name: UNIVERSITY OF TEXAS AT ARLINGTON

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA613319

Quality Control Information

Filter Percentage: 0.0

QC Average Length: -

Retained Reads: -

Geographic Information

Country: USA

Continent: North America

Location Name: USA: North Carolina, Shooting Creek

Latitude/Longitude: 35.085 N 83.6177 W

Sample Information

Host: serpentine grasses

Isolation: -

Biosample Model: -

Collection Date: 2017-06-08

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR11354260
17.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 17
Aerobic_Chemoheterotrophy 12
Methanol_Oxidation 3
Methylotrophy 3
Intracellular_Parasites 3
Ureolysis 3
Hydrocarbon_Degradation 2
Back to Amplicons List
Back to Table