SRR11070272 - Cnaphalococis medinalis

Basic Information

Run: SRR11070272

Assay Type: AMPLICON

Biosample: SAMN14086213

Bytes: 32125906

Center Name: ZHEJIANG ACADEMY OF AGRICULTURAL SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA606133

Geographic Information

Country: China

Continent: Asia

Location Name: China: Hangzhou

Sample Information

Host: Cnaphalococis medinalis

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR11070272

30.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 253

Chemoheterotrophy

Aerobic_Chemoheterotrophy 212

Aerobic_Chemoheterotrophy

Nitrate_Reduction 41

Nitrate_Reduction

Fermentation 29

Fermentation

Aromatic_Compound_Degradation 28

Aromatic_Compound_Degradation

Nitrate_Respiration 21

Nitrate_Respiration

Nitrogen_Respiration 21

Nitrogen_Respiration

Ureolysis 20

Ureolysis

Animal_Parasites_Or_Symbionts 17

Animal_Parasites_Or_Symbionts

Methanol_Oxidation 16

Methanol_Oxidation

Methylotrophy 16

Methylotrophy

Human_Pathogens_All 15

Human_Pathogens_All

Human_Associated 15

Human_Associated

Nitrogen_Fixation 11

Nitrogen_Fixation

Predatory_Or_Exoparasitic 8

Predatory_Or_Exoparasitic

Photosynthetic_Cyanobacteria 7

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 7

Oxygenic_Photoautotrophy

Photoautotrophy 7

Photoautotrophy

Phototrophy 7

Phototrophy

Intracellular_Parasites 6

Intracellular_Parasites

Nitrate_Denitrification 4

Nitrate_Denitrification

Nitrite_Denitrification 4

Nitrite_Denitrification

Denitrification 4

Denitrification

Nitrite_Respiration 4

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 4

Dark_Oxidation_Of_Sulfur_Compounds

Chitinolysis 2

Chitinolysis

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Invertebrate_Parasites 2

Invertebrate_Parasites

Human_Pathogens_Nosocomia 2

Human_Pathogens_Nosocomia

Plant_Pathogen 2

Plant_Pathogen

Aromatic_Hydrocarbon_Degradation 2

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Xylanolysis 1

Xylanolysis

Ligninolysis 1

Ligninolysis

Human_Pathogens_Diarrhea 1

Human_Pathogens_Diarrhea

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

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